Table 2. Functional annotation of common DEGs found in both HPAIV and LPAIV infected duck cells. Enriched GO terms of Biological process (BP), Cellular Component (CC) and molecular function (MF) were analyzed using WebGestalt

Biological process
GO ID GO term Number of genes Enrichment P-value FDR Gene name
GO:0035987 Endodermal cell differentiation 6 22.44563 1.15E-07 3.52E-04 INHBA; FN1; COL5A2; CTNNB1; COL8A1; COL12A1
GO:0007492 Endoderm development 7 15.93965 1.50E-07 3.52E-04 INHBA; ZFP36L1; FN1; COL5A2; CTNNB1; COL8A1; COL12A1
GO:0001706 Endoderm formation 6 20.94925 1.88E-07 3.52E-04 INHBA; FN1; COL5A2; CTNNB1; COL8A1; COL12A1
GO:0044271 Cellular nitrogen compound biosynthetic process 56 1.649548 1.93E-05 0.027123 RPS17; ATRX; RPL10A; GTF2A1; IGF2BP3; ZEB1; RPLP0; YEATS4; INHBA; BASP1; PDLIM7; MTA3; RPS15A; ZFP36L1; POLR2F; USP7; RPLP1; RPS12; ATF2; ELOVL6; BCL9; HSF2; BAMBI; TCF12; RPL32; NFIL3; RARB; RNF111; ZEB2;I RF2; PPP1R12A; RPS21; CTDSPL; LMO4; ENO1; DDX1; PRPSAP2; TCF21; VLDLR; EIF4A2; ZFHX3; YBX3; CTNNB1; RUNX1T1; CCND1; EIF3E; ETV6; CEBPB; KDM3A; RPS14; RPL30; RPS16; WAC; ATF4; AMD1; RPS15
GO:0010467 Gene expression 60 1.583865 2.87E-05 0.032207 RPS17; ATRX; RPL10A; GTF2A1; IGF2BP3; ZEB1; RPLP0; YEATS4; INHBA; BASP1; PDLIM7; MTA3; FAM98A; RPS15A; PAPD7; ZFP36L1; POLR2F; USP7; SPPL3; RPLP1; RPS12; ATF2; BCL9; HSF2; BAMBI; TCF12; RPL32; NFIL3; RARB; RNF111; ZEB2; XRN1; FN1; IRF2; PPP1R12A; RPS21; CTDSPL; LMO4; DDX1; TCF21; RBM26; VLDLR; EIF4A2; NOVA1; ZFHX3; YBX3; CTNNB1; RUNX1T1; CCND1; EIF3E; ETV6; CEBPB; KDM3A; RPS14; RPL30; RPS16; WAC; ATF4; TSPAN14; RPS15
GO:0006412 Translation 16 3.126754 4.60E-05 0.043071 RPS17; RPL10A; IGF2BP3; RPLP0; RPS15A; ZFP36L1; RPLP1; RPS12; RPL32; RPS21; EIF4A2; EIF3E; RPS14; RPL30; RPS16; RPS15
Cellular component
GO ID GO term No of genes Enrichment P-value FDR Gene name
GO:0022626 Cytosolic ribosome 12 11.74634 2.42E-10 1.84E-07 RPL10A; RPLP0; RPS15A; RPLP1; RPS12; RPL32; RPS21; RPS25; RPS14; RPL30; RPS16; RPS15
GO:0005840 Ribosome 14 6.739704 1.48E-08 4.46E-06 RPS17; RPL10A; RPLP0; RPS15A; MRPL39; RPLP1; RPS12; RPL32; RPS21; RPS25; RPS14; RPL30; RPS16; RPS15
GO:0044391 Ribosomal subunit 13 7.341463 1.76E-08 4.46E-06 RPL10A; RPLP0; RPS15A; MRPL39; RPLP1; RPS12; RPL32; RPS21; RPS25; RPS14; RPL30; RPS16; RPS15
GO:0044445 Cytosolic part 13 6.94102 3.51E-08 6.66E-06 RPL10A; RPLP0; RPS15A; RPLP1; RPS12; RPL32; RPS21; ENO1; RPS25; RPS14; RPL30; RPS16; RPS15
GO:0005829 Cytosol 45 2.105918 2.25E-07 2.96E-05 RPL10A; NUTF2; GTF2A1; RPLP0; DNAJA2; ASCC3; RPS15A; ZFP36L1; FBXO11; USP7; RPLP1; RPS12; PRKD3; CDH2; CABIN1; RPL32; RNF111; ZEB2; XRN1; IRF2; PPP1R12A; PPP2CA; RPS21; ENO1; DDX1; TPT1; AKTIP; HERC4; RAB5A; MYH10; DNAJA1; YBX3; CTNNB1; AFTPH; RPS25; XPOT; ETV6; RPS14; RPL30; RPS16; GNA13; AMD1; USP8; RBMS1; RPS15
GO:0022627 Cytosolic small ribosomal subunit 7 15.22674 2.34E-07 2.96E-05 RPS15A; RPS12; RPS21; RPS25; RPS14; RPS16; RPS15
GO ID GO term Number of genes Enrichment P-value FDR Gene name
GO:0043232 Intracellular non-membrane-bounded organelle 50 1.807129 4.13E-06 3.99E-04 RPS17; ATRX; RPL10A; RDH10; RPLP0; YEATS4; BASP1; PDLIM7; MTA3; RPS15A; PAPD7; ZFP36L1; POLR2F; FBXO11; MRPL39; MYCBP2; USP7; RPLP1; RPS12; SPTBN1; HSF2; CDH2; SPTAN1; RPL32; ZEB2; PPP1R12A; PPP2CA; RPS21; HUS1; TPT1; GSN; HERC4; RAB5A; MYH10; NOVA1; DNAJA1; CTNNB1; SEPT11; CALD1; RPS25; ACTN1; ETV6; CEBPB; KDM3A; RPS14; RPL30; RPS16; ATF4; CLTC; RPS15
GO:0043228 Non-membrane-bounded organelle 50 1.806018 4.20E-06 3.99E-04 RPS17; ATRX; RPL10A; RDH10; RPLP0; YEATS4; BASP1; PDLIM7; MTA3; RPS15A; PAPD7; ZFP36L1; POLR2F; FBXO11; MRPL39; MYCBP2; USP7; RPLP1; RPS12; SPTBN1; HSF2; CDH2; SPTAN1; RPL32; ZEB2; PPP1R12A; PPP2CA; RPS21; HUS1; TPT1; GSN; HERC4; RAB5A; MYH10; NOVA1; DNAJA1; CTNNB1; SEPT11; CALD1; RPS25; ACTN1; ETV6; CEBPB; KDM3A; RPS14; RPL30; RPS16; ATF4; CLTC; RPS15
GO:0015935 Small ribosomal subunit 7 10.02736 4.86E-06 4.10E-04 RPS15A; RPS12; RPS21; RPS25; RPS14; RPS16; RPS15
GO:0098984 Neuron to neuron synapse 9 6.607317 7.52E-06 5.71E-04 RPLP0; SPTBN1; CDH2; YWHAZ; CTNNB1; RPS25; RPS14; RPL30; USP8
GO:1990904 Ribonucleoprotein complex 20 2.936585 1.16E-05 8.03E-04 RPS17; RPL10A; RPLP0; RPS15A; ZFP36L1; MRPL39; RPLP1; RPS12; HNRNPAB; RPL32; RPS21; MYH10; EIF3E; RPS25; RPS14; RPL30; RPS16; WAC; RBMS1; RPS15
Molecular function
GO ID GO term No of genes Enrichment P-value FDR Gene name
GO:0003735 Structural constituent of ribosome 12 6.053547 5.25E-07 5.90E-04 RPS17; RPL10A; RPLP0; RPS15A; RPLP1; RPS12; RPL32; RPS21; RPS14; RPL30; RPS16; RPS15
GO:0005198 Structural molecule activity 20 2.780275 2.65E-05 0.014872 RPS17; COL3A1; RPL10A; NUTF2; RPLP0; RPS15A; RPLP1; RPS12; SPTBN1; RPL32; RPS21; COL5A2; ANK3; SEPT11; RPS14; RPL30; RPS16; CLTC; COL8A1; RPS15